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External SOPs

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This page lists well-established and tested protocols from the International Human Microbiome Consortium IHMS and the Earth Microbiome Project EMP. Both are collections of SOPs that are experimentally validated for their given fields, human and earth microbiome research respectively.

Title Organisation Category Link
Standard operating procedure for fecal samples identification International Human Microbiome Standards (IHMS) Sample Collection SOP 01
Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 hours International Human Microbiome Standards (IHMS) Sample Collection SOP 02
Standard operating procedure for fecal samples self-Collection, laboratory analysis handled within 4 to 24 hours International Human Microbiome Standards (IHMS) Sample Collection SOP 03
Standard operating procedure for fecal samples frozen preserved self-Collection, laboratory analysis handled within 24 hours to 7 days International Human Microbiome Standards (IHMS) Sample Collection SOP 04
Standard operating procedure for fecal samples preserved in stabilizing solution self-Collection, laboratory analysis handled within 24 hours to 7 days International Human Microbiome Standards (IHMS) Sample Collection SOP 05
Standard operating procedure for fecal samples DNA Extraction, protocol Q International Human Microbiome Standards (IHMS) DNA Extraction SOP 06
Standard operating procedure for fecal samples DNA Extraction, protocol H International Human Microbiome Standards (IHMS) DNA Extraction SOP 07
DNA Extraction Protocol Earth Microbiome DNA Extraction DNA Extraction Protocol
16S Illumina Amplicon Protocol Earth Microbiome DNA Sequencing 16S Illumina Amplicon Protocol
18S Illumina Amplicon Protocol Earth Microbiome DNA Sequencing 16S Illumina Amplicon Protocol
ITS Illumina Amplicon Protocol Earth Microbiome DNA Sequencing ITS Illumina Amplicon Protocol

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Citation

National Research Data Infrastructure for Microbiota Research (NFDI4Microbiota). (2024, September 30). External SOPs. NFDI4Microbiota Knowledge Base.